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Overview

Welcome to OGRP

OGRP (Oleaceae Genome Research Platform) is a comprehensive and easy-to-use platform for studying the functional genomics of the Oleaceae. It obtained all 10 deciphered Oleaceae plants genomes, and integrated 34 comparative genomics tools and established three comparative genomic pipelines, involving the identification of polyploidization events, ancestral karyotype reconstruction, and identification of gene families. Significantly, researchers efficiently search for 1,785,987 functional annotations, 12,664 transcription factor related genes, 75 important functional gene families, 9,178,872 transposable elements. ORGP will continue to be open, updated, and improved, to promote Oleaceae comparative genomics research.





Genomic analysis pipelines



Genome Data (70)

Species Name Genome Version Genome Access Genome Size (Mb) Assembly Level Provenance
Forsythia suspensa Forsythia-HENAU2018 GCA_013103335.1 737.5 Contig
Forsythia suspensa JALRMA01 GCA_020510225.1 737.6 Chromosome
Forsythia suspensa JAHHPY01 GCA_023638005.1 737.5 Chromosome
Fraxinus americana FRAX14-0.1 GCA_903798225.1 642.6 Scaffold
Fraxinus excelsior FRAX_001 GCA_019097785.1 806.5 Chromosome
Fraxinus excelsior BATG-0.5 GCA_900149125.1 867.5 Scaffold
Fraxinus pennsylvanica version 1.5 GCA_912172775.2 756.8 Chromosome
Fraxinus pennsylvanica FRAX09-0.1 GCA_903798245.1 902.5 Scaffold
Fraxinus pennsylvanica FRAX03-0.1 GCA_902829185.1 700.9 Contig
Fraxinus pennsylvanica FRAX10-0.1 GCA_902829155.1 761 Contig
Jasminum sambac Hutoumoli GCA_018223645.1 505.5 Chromosome
Jasminum sambac Single-petal GWHBFHK00000000 502.3 Chromosome
Jasminum sambac Double-petal GWHBFHJ00000000 487 Chromosome
Jasminum sambac ... GWHAZHY00000000 550 Chromosome
Jasminum sambac JSU-FSP GWHBISM00000000 500.6 Chromosome
Jasminum sambac Hutou GWHDUBQ00000000 469.5 Chromosome
Olea europaea O_europaea_v1 GCA_002742605.1 1126.4 Chromosome
Olea europaea Farga GCA_902713445.1 1331.2 Chromosome
Olea europaea YAF_Ocus_V1 GCA_023089605.1 1228.8 Chromosome
Olea europaea OE6 GCA_900603015.1 1331.2 Scaffold
Osmanthus fragrans Liuyejingui GCA_019395295.1 733.3 Chromosome
Syringa oblata IBSOV1 GWHBHRY00000000 1146.9 Chromosome
More ... ... ... ... ...


Update log

  • Nov. 10, 2023   The "Karyotype animation", which can show the evolutionary trajectory of Oleaceae karyotypes, is now available

  • Nov. 10, 2023   The "Gene function annotation", which is a gene annotation tool that allows the annotation of multiple databases in a single run, is now available

  • Nov. 10, 2023   The "KEGG database", which can show a collection of manually drawn pathway maps representing the molecular interaction, is now available

  • Nov. 8, 2023   The "Transposable elements", also known as jumping genes, is now available

  • Nov. 7, 2023   The "Transcription factors", also known as trans-acting factor, is now available

  • Nov. 5, 2023   The "Duplication type", which can divide all genes into 5 categories according to the replication type, is now available

  • Nov. 7, 2022   The "Event-related genes", which can search multiple sets of event related genes, is now available

  • Nov. 6, 2022   The "Hierarchical alignments", which can show multi genomes collinear gene table, is now available

  • Nov. 6, 2021   The "Blast visualization", which can search function annotation and position, is now available

  • Dec. 27, 2020   The "Circle" has been updated

  • May. 7, 2020   The "P-index", which can show collinearity in macro-region, is now available

  • Apr. 15, 2020   The "specie_tree", which can show collinearity in micro-region, is now available

  • Nov. 6, 2020   The "Dotplot", which can search function annotation and position, is now available

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