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Overview

Welcome to FGBP

FGBP (Fabaceae Genome Bioinformatics Platform) is our user-friendly, web-based comparative genomics platform based on -- published genomes of 57 Fabaceae species.The FGBP platform stores 1825 dotplots result, multilevel covariates, karyotype evolutionary trajectory animations, gene-wide structural domain identification and replication event-related genes. Analysis results for each Fabaceae family and their relationships can be displayed, searched and downloaded from the database.

物种数据

CuGenDB

CuGenDB

Link

CuAS

CuAS

Link

CBGD

CBGD

Link

Species_name Abbr chr_number Genes_number Data_link CDS PEP GFF3 Reference_link
Begonia darthvaderiana Bda 15 22773 Data_link CDS PPE GFF3 (Li, et al. 2022)
Benincasa hispida Bhi 12 31667 Data_link CDS PPE GFF3 (Xie, et al. 2019)
Begonia loranthoide Blo 12 20077 Data_link CDS PPE GFF3 (Li, et al. 2022)
Begonia masoniana Bma 15 22731 Data_link CDS PPE GFF3 (Li, et al. 2022)
Begonia peltatifolia Bpe 15 19834 Data_link CDS PPE GFF3 (Li, et al. 2022)
Cucurbita argyrosperma Car 20 27998 Data_link CDS PPE GFF3 (Barrera-Redondo, et al. 2021)
Cucumis hystrix Chy 12 22203 Data_link CDS PPE GFF3 (Qin, et al. 2021)
Citrullus lanatus Cla 11 22104 Data_link CDS PPE GFF3 (Guo, et al. 2013)
Cucurbita maxima Cma 20 31283/td> Data_link CDS PPE GFF3 (Sun, et al. 2017)
Cucumis melo Cme 12 28298 Data_link CDS PPE GFF3 (Shin, et al. 2019)
Cucurbita moschata Cmo 20 32023 Data_link CDS PPE GFF3 (Sun, et al. 2017)
Cucurbita pepo Cpe 20 26232 Data_link CDS PPE GFF3 (Montero-Pau, et al. 2018)
Cucumis sativus Csa 7 23522 Data_link CDS PPE GFF3 (Li, et al. 2019)
Lagenaria siceraria Lsi 11 22234 Data_link CDS PPE GFF3 (Wu, et al. 2017)
Vitis vinifera Vvi 19 23,647 Data_link CDS PPE GFF3 (Jaillon, et al. 2007)

Update log

  • Nov. 6, 2021   The "Blast visualization", which can search function annotation and position, is now available

  • Dec. 27, 2020   The "Circle" has been updated

  • Aug. 5, 2020   The "Gene families", which can search gene of Triticeae by well-stueied gene of rice, maize, and Arabidopsis, is now available

  • May. 7, 2020   The "P-index", which can show collinearity in macro-region, is now available

  • Apr. 15, 2020   The "specie_tree", which can show collinearity in micro-region, is now available

  • Nov. 6, 2020   The "Dotplot", which can search function annotation and position, is now available

  • Aug. 2, 2019   Comparative genomics research platform of early eudicots (CGRPOEE) plantform is now open

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